Blekhman Lab GitHub
github.com/blekhmanlab
Human Microbiome Compendium
An ongoing project to build a dataset of the human microbiome at an unprecedented scale
BiomeHorizon
An R package for visualizing microbiome time series data
Rxivist
A website to sort through bioRxiv preprints and find relevant, trending papers
HOMINID
A program to identify associations between host genetic variation and microbiome composition using machine learning
Integration of 168,000 samples reveals global patterns of the human gut microbiome
Abdill, Graham et al. — Cell, 2025
Assembly of the infant gut microbiome and resistome are linked to bacterial strains in mother's milk
Ferretti, Allert et al. — Nature Communications, 2025
Human milk variation is shaped by maternal genetics and impacts the infant gut microbiome
Johnson et al. — Cell Genomics, 2024
Human Cytomegalovirus in breast milk is associated with milk composition and the infant gut microbiome and growth
Johnson et al. — Nature Communications, 2024
Public human microbiome data are dominated by highly developed countries
Abdill, Adamowicz & Blekhman — PLOS Biology, 2022
Identification of shared and disease-specific host gene–microbiome associations across human diseases
Priya et al. — Nature Microbiology, 2022
Gut microbiome heritability is nearly universal but environmentally contingent
Grieneisen et al. — Science, 2021
Interspecies variation in hominid gut microbiota controls host gene regulation
Muehlbauer et al. — Cell Reports, 2021